August 2, 2026
Nargess Mehdipour

Nargess Mehdipour

Academic Rank: Associate professor
Address:
Degree: Ph.D in -
Phone: -
Faculty: Faculty of Nano and Biotechnology

Research

Title
Dissipative Particle Dynamics Simulation of Choline-Based Ionic Liquids Mixed with Water
Type Thesis
Keywords
coarse-graining, polyamide
Researchers fatemeh janahmadi (Student) , Nargess Mehdipour (First primary advisor) , Hossein Eslami (Second primary advisor)

Abstract

The transferability of force fields in coarse-grained (CG) modeling of polymers, particularly its dependence on extraction conditions (temperature and density), presents a significant challenge. This study investigates the transferability of CG potentials for polyamide-6,6 using two mapping schemes; one bead per monomer and two beads per monomer. The CG potentials were tuned by iteratively matching the CG distributions to their corresponding atomistic distributions. The potentials were derived at high (600 K) and low (300 K) temperatures, and each was evaluated based on its ability to reproduce atomistic distributions at 440 K, i.e., a temperature midway between the two initial temperatures. We further examined the effects of bead size (i.e., the number of beads per monomer) and torsional degrees of freedom on the transferability of the CG potentials. For the one-bead-per-monomer mapping scheme, increasing temperature led to a broadening of structural distributions, including bond lengths, bond angles, torsions, and nonbonded interactions. In terms of transferability, the force field derived at 600 K showed acceptable performance when tested against atomistic distributions at 440 K, although the density increased by approximately 8.5%. In contrast, the force field derived at 300 K did not maintain a stable melt structure for the polymer at 440 K. The two-bead-per-monomer mapping scheme, on the other hand, resulted in a significant improvement in force-field transferability. In this model, both force fields (generated at 600 K and 300 K) were able to reproduce the structural distributions and density at 440 K with higher accuracy, compared to the onebead-per-monomer model. Overall, the findings suggest that increasing the resolution of the CG model improves the transferability of CG potentials. However, the inclusion of torsional degrees of freedom in the CG potential does not significantly affect the nonbonded distributions or the overall transferability of the forc