Microbial contamination under in vitro tissue culture is considered as one of the most important limiting factors for micropropagation. However, due to the unique properties of palm tree under long -time tissue culture period, identification of media contaminants is important for the application of the best method of control. In this study five different genera of fungi were identified as a source of pollution in palm tissue culture. It was revealed that the fungal infection in palm tissue culture media was caused byAspergillus spp. (43%),Rhizoctonia spp. (21%), Fusarium spp. and Penicillium spp. (each with 14 %), respectively. Caladosporiom spp. with 8% abundance caused the least infection in the tissue culture. The fungi identified in this study decreased the success of tissue culture significantly.